Genetic Improvement at the Commercial Level
Compared to Genetic Progress at the Nucleus Level
Jan W.M. Merks
IPG,
Institute for Pig Genetics B.V. (a TOPIGS company), The Netherlands
Introduction
A pig-breeding program generally consists of different levels in a
pyramidal structure, indicated as nucleus, multiplication and commercial level.
Selection takes place at all levels, but improvements generated in the nucleus
eventually determine the rate of annual genetic change. This genetic change is
economically important at all levels, but especially at the commercial level
because of the relatively large number of animals.
Generally, selection at the nucleus level for growth and carcass traits
is based on performance testing (both for production and reproduction traits),
supplemented with family information. The testing usually takes place at the
nucleus farms, sometimes central test stations, under more or less standardized
environmental conditions to allow a fair comparison of the tested pigs.
However, these sophisticated conditions deviate from the conditions at the
multiplication level and certainly also from the conditions at commercial
fattening where the breeding goal is defined. As a consequence, changes in rank
order for genotypes between these environments may occur and lower the
efficiency of a pig breeding program in terms of genetic progress at the
commercial level.
Changes in rank order of genotypes between environments are indicated as
genotype x environment interaction (G x E). Falconer (1952) proposed to measure
changes in rank order between environments as the genetic correlation between
phenotypes for the same genotype in different environments. This concept is
based on the assumption that the expression of identical traits may in fact not
be controlled by the same sets of genes if G x E exists. If the presence of G x
E is just a matter of scale, thus without affecting the ranking of breeding
animals, the genetic correlation equals one. In that case G x E does not affect
the efficiency of the breeding program.
During the last several decades several non-unit estimates of genetic
correlations between the different levels of pig breeding programs were
reported. These results must be considered as serious indications of lower
genetic progress at commercial level than at nucleus level for both production
and reproduction traits. This paper summarizes several analyses dedicated to
find the leaks in the flow of genetic progress from nucleus herds to commercial
level and presents opportunities to overcome these problems.
Description of genotype x environment interaction in pig breeding
programs
Modern pig-breeding programs are 3 or 4 breed/line crossbreeding
programs. When describing the problem of genotype x environment interaction in
pig breeding programs, genotype is always represented by sires, but for the
environment a distinction has to be made between three categories:
- Specified factors within farms such as
feeding regime, housing system and sex,
- Husbandry circumstances in general, e.g.
farms, health level, level in the production pyramid, or outside climate,
- Pure breeding (nucleus) versus
crossbreeding (commercial level).
Any of these categories may be a factor in G x E and consequently reduce
genetic progress on the commercial level. Interaction of genotype with a
specific environmental factor may also be responsible for an interaction of
genotype and herds if differences for this factor exist between herds.
Interaction of genotype and herds may in turn be responsible for interaction of
genotype and level of the breeding program, as the commercial environment includes
different herds. Crossbreeding versus pure breeding is a factor by itself, but
may also interact with the other factors.
Research on interaction of genotype and specific environmental factors
helps to decide whether it is necessary to match these factors in the nucleus
with those under commercial conditions. But not all differences in the
environment between nucleus herds and commercial herds can be specified. It is
even more difficult to specify differences in the environment between
commercial herds.
A short description of G x E in pig breeding programs was given by
Brascamp et al. (1985). On the basis
of that general description, G x E can be described as in Figure 1. The three
blocks represent the three levels of the breeding program; nucleus herds with
performance testing, multiplier herds with on-farm testing and commercial herds
with fattening pigs. The genotype x environment interaction between the
different levels is represented by rG,
while rg (analogous to the
description of Brascamp et al., 1985)
represents the genotype x environment interactions within a level of the
breeding program.
Figure 1. Schematic description of the genotype x environment
interaction problem in pig breeding programs (Brascamp et al., 1985)
Summary of
different G x E studies
During
the last decade several studies on the different aspects of G x E have been
performed. In this paper most of these studies are summarized including the
data used to enable a better understanding of the problem and potential
solutions.
1. Purebred versus crossbred performance in nucleus
herds (Merks and Hanenberg, 1998)
In most commercial pig breeding programs, the selection in the nucleus
is based on pure line performance (PLS) to improve performance within lines/breeds.
However, in commercial pork production, performance of crossbred pigs is
dominantly important. A combined
crossbred and pure line selection (CCPS) method shows to be superior to PLS in
many different situations (Bijma and Van Arendonk, 1998).
In order to apply CCPS successively, the genetic correlation between
purebred and crossbred performance (rpc) and the crossbred
heritability (h2c) are crucial factors (Van der Werf et
al., 1994).
Merks and Hanenberg (1998) presented a) the results of the estimation of
rpc and (h2c in the TOPIGS breeding program for Great Yorkshire (GY-s)
line performance compared to the performance of Duroc x GY-s and Pietrain x
GY-s crossbreds and b) the consequences of these estimates for optimal
selection strategy. To choose the optimal selection strategy, the GY-s breed is
selected for both production of purebred GY-s as well as for crossbred terminal
boars while Duroc is selected for production of crossbred boars only.
Data used
Production data were used from pure line and crossbred
populations of the TOPIGS sire lines Great Yorkshire (GY-s), Duroc (D),
Pietrain (P) and their crosses P*GY-s and D*GY-s. Data were collected for the
traits weight at 180 days (kg) and backfat thickness at 110 kg (mm). For
crossbred populations, only information of traits measured on boars was
available. Data from 72,419 animals, recorded from June, 1992 to May, 1997 were
used in the analysis (P*GY-s data since March 1993). Data were obtained from 1
D-nucleus farm and 50 GY-s nucleus farms. Most GY-s nucleus farms were also
D*GY-s or P*GY-s multiplier. Pure line information of Pietrain was not used
because of their low numbers.
Results
Estimates of heritability for weight under a univariate model varied
from 0.20 for GY-s to 0.45 for D*GYs. Estimates of heritability for backfat
were higher and varied from 0.37 for GY-s to 0.62 for D. Genetic correlations
between purebred and crossbred populations are given in Table 1. Genetic
correlations were highest for weight and did not significantly differ from 1.
Genetic correlations for backfat thickness varied from 0.61 between D and
D*GY-s to 0.95 between GY-s and D*GY-s.
Table 1. Estimates of heritability and genetic correlations for weight
and backfat between purebred (PB) and crossbred (CB) populations (Merks and Hanenberg,
1998). * SE not estimable.
|
Trait
|
PB
|
CB
|
h2p
|
h2c
|
rpc (± s.e.)
|
|
Weight
|
GY-s
|
D*GY-s
|
0.33
|
0.46
|
0.90 ± 0.03
|
|
D
|
D*GY-s
|
0.27
|
0.43
|
1.00 ± *
|
|
GY-s
|
P*GY-s
|
0.22
|
0.42
|
1.00 ± *
|
|
Backfat
|
GY-s
|
D*GY-s
|
0.42
|
0.58
|
0.95 ± 0.02
|
|
D
|
D*GY-s
|
0.57
|
0.51
|
0.61 ± 0.11
|
|
GY-s
|
P*GY-s
|
0.41
|
0.66
|
0.74 ± 0.05
|
For the situation of
the Stamboek breeding program, the use of PLS and reciprocal recurrent
selection (RRS) may be applied in two ways:
- Half sib RRS scheme (HS-RRS); selected pure line animals produce
the next purebred generation and the crossbred progeny simultaneously.
- Two stage RRS scheme (TS-RRS); two stage selection with independent
culling levels for purebred and crossbred progeny performance. The
purebred selection precedes each cycle of crossbred selection.
The results of the effectiveness for crossbred selection response of
using only crossbred (RRS) versus only purebred (PLS) information are indicated
in Table 2. For each sire 15 (half sibs) crossbred progeny are assumed.
Table 2. The effectiveness of using only purebred versus only crossbred
information (PLS/RRS) for relative crossbred selection response in the system
of half sib RRS (HS-RRS) and two stage RRS (TS-RRS) (Merks and Hanenberg, 1998)
|
PB
|
CB
|
Weight
|
Backfat
|
|
HS-RRS
|
TS-RRS
|
HS-RRS
|
TS-RRS
|
|
GY-s
|
D*GY-s
|
0.64
|
1.02
|
0.73
|
1.17
|
|
D
|
D*GY-s
|
0.65
|
1.04
|
0.56
|
0.90
|
|
GY-s
|
P*GY-s
|
0.59
|
0.94
|
0.55
|
0.88
|
The application of these results in a commercial pig
breeding program is dependent on different factors. Two approaches basically
may be used to achieve crossbred improvement. First, pure line selection (PLS)
based on the breeding animal and its relatives’ information within populations
is utilized. Under this approach, accomplished genetic gain in crossbreds
arises from the regression on purebred response. Alternatively, reciprocal
recurrent selection (RRS) is based on the breeding animals’ crossbred
information. The last method has shown its advantage to improve traits with low
heritability and large non-additive variation (Wei and Van der Steen, 1991).
The results of this study show the effectiveness of
using crossbred data for genetic improvement of both purebreds and crossbreds.
The effectiveness of CCPS or RRS versus PLS does not only depend on the genetic
correlation between purebred and crossbred performance and crossbred
heritability, but also on the chosen selection system. For traits with high
heritabilities and high genetic correlations, the use of crossbred information
is advantageous, only if gathering this information does not prolong generation
interval.
2.
Sire x herd interaction within the nucleus level (Merks, 1988)
In an earlier paper (Merks,
1987) the existence of sire x herd interaction in the nucleus level was
reported for purebred on-farm test results. Merks (1988) investigated the
significance of this sire x herd interaction, and the genetic correlations
between the same traits measured across various herds were estimated.
Data used
The data used were from
Dutch Landrace (NL) gilts and Dutch Yorkshire (GY) gilts and boars tested in
the Stamboek field-testing program between May 1980 and December 1983. In the
on-farm test, pigs are weighed (weight) and their backfat thickness is measured
ultrasonically (backfat) at about 180 days of age. The study included data from
31,268 Dutch Landrace gilts and 16,828 Dutch Yorkshire boars.
Results
The sire x herd interaction
was significant (P<0.001) for all traits in both data sets. The sire x herd
interaction component may be inflated by differences in genetic scale between
environments. Heterogeneity of genetic variances was investigated by estimating
variance components within herds. Thirty to ninety percent of the sire x herd
interaction was due to unequal genetic variances in the different herds. This
heterogeneity of genetic variance was only related to the within herd standard
deviation to a small extent, and even less to the herd level for weight or
backfat.
The degree of relevance of
the sire x herd interaction for the breeding program is measured by rg.
These correlations, presented in Table 3, may be underestimated due to genetic
heterogeneity. To get an indication of the size of the possible
underestimation, a correction with vâr (σSi) was performed.
Also these adjusted intra-class correlations are tabulated in Table 3. The
adjusted intra-class correlations (r’g) are 25 – 50 % higher than
the unadjusted correlations.
Table 3. Genetic correlations (rg)
between sires’ progeny in different herds and thegenetic correlations after
correcting for genetic heterogeneity (r’g) from Merks, 1988
|
|
NL ♀
|
GY ♀
|
GY ♂
|
|
|
rg
|
r’g
|
rg
|
r’g
|
rg
|
r’g
|
|
Weight
|
0.29 ±0.04
|
0.37
|
0.32 ±0.06
|
0.48
|
0.46 ±0.06
|
0.71
|
|
Backfat
|
0.73 ±0.04
|
0.92
|
0.46 ±0.06
|
0.62
|
0.48 ±0.05
|
0.90
|
|
Index
|
0.55 ±0.04
|
0.73
|
0.49 ±0.08
|
0.71
|
0.46 ±0.06
|
0.67
|
Since the differences
between herds are numerous and sometimes not definable (e.g. pathogen levels and
management), it is very unlikely that only factors like feeding level or
housing system are responsible for the sire x herd interactions. In that case
selection of sires on the basis of sib or even progeny results in different
herds may be desirable. Brascamp et al.
(1985) indicated that progeny testing becomes more attractive than the use of
sib results when the correlation between central test and on-farm test
(indicated as rg) is below 0.5. As the estimated correlations among
herds approach the upper limit for rg (Brascamp et al., 1985), at least for weight, sib and perhaps even progeny
testing may be more efficient.
3. Purebred performance in SPF
versus conventional health systems (Bergsma et
al., 2001)
Breeding
company TOPIGS has the availability of nucleus farms under conventional and
under SPF health status. The question is whether or not selection will yield
similar animals under both health conditions.
Data used
Genetic
linkage between conventional and SPF herds was considered sufficient for an
accurate estimate of the genetic correlation for reproduction parameters. These
herds originated from the original conventional (Roosendaal) and the SPF
nucleus (Brouennes) herd. Finishing traits, however, were hardly measured at
the SPF foundation herd, but stem from one step further (Comigo and Kipling).
Bivariate genetic analyses
were performed with a specific trait treated as two separate traits, one under
conventional and one under SPF conditions. ASREML was used to calculate genetic
parameters.
Results
Genetic parameters are given in Table 4. Two interesting results for
reproduction traits: the genetic correlation between the two health
environments was high not significantly different from 1 for litter size and
#stillborn. It was high for gestation length, but somewhat lower than 1.0.
Heritabilty for litter size was somewhat higher under SPF than under
conventional, due to a higher genetic variance.
Table
4: Genetic parameters for reproduction and production traits under different health
conditions (Bergsma et al., 2001)
|
|
h2conv
|
h2
spf
|
p2
conv
|
p2
spf
|
rg
|
σ2 conv
|
σ2
spf
|
|
Litter size
|
0.099±0.011
|
0.135±0.020
|
0.0875±0.009
|
0.091±0.018
|
0.92±0.19
|
0.92
|
1.14
|
|
#stillborn
|
0.054±0.007
|
0.056±0.014
|
0.0493±0.008
|
0.059±0.015
|
1.00±0.28
|
0.11
|
0.10
|
|
Gest.length
|
0.317±0.016
|
0.309±0.028
|
0.086±0.011
|
0.080±0.021
|
0.76±0.13
|
0.72
|
1.00
|
|
Life gain
|
0.240±0.035
|
0.197±0.027
|
0.198±0.017
|
0.177±0.014
|
0.98±0.25
|
1032
|
779
|
|
Back fat
|
0.423±0.035
|
0.386±0.033
|
0.065±0.013
|
0.095±0.012
|
0.69±0.18
|
0.870
|
0.405
|
For life gain and for backfat somewhat higher
heritabilities were estimated for the traits under conventional health.
Reproduction information was available in a genetically well-structured data
set. Genetic correlations for three different reproduction traits were hardly
different from one. Heritability for litter size was somewhat higher under SPF
than under conventional health conditions. For genetic improvement in the
mentioned traits there is a slight advantage for selection under SPF, even for
genetic progress under conventional situations.
Figure
2: Genetic correlations under different health conditions for litter size
4. Purebred performance in tropical versus temperate
environment (Mote, 2000)
Bunge (BMI) has its nucleus farms both in temperate (Australia) and
tropical (Indonesia) environment. By exchange of semen between these herds,
Mote (2000) was enabled to find out how these conditions affected genetic
progress.
Data used
Genetic parameters were estimated for growth rate from birth to
slaughter age (GR), backfat measured at the P2 site (Ps) and number of live
born piglets (NBA) in a temperate and a tropical environment. Semen was
collected from 22 service sires (14 Large White and 8 Landrace) at Bunge in
Australia (temperate environment) and part of this semen was sent to Culindo in
Indonesia (tropical environment). This semen was used at both places, thus
creating a genetic link between both operations.
Data used to calculate genetic parameters for GR and BF were collected
for 19,304 progeny at BMI and 5,102 progeny at Culindo between July 1997 and
August 1999. Farrowing records were collected from January 1997 to August 1999
and totalled 6,097 records at BMI and 4,083 records at Culindo.
Results
The heritability for GR was 0.25 for both environments. The heritability
for P2 at BMI was 0.37 (±0.02), which was not significantly higher than the
heritability of 0.30 (±0.04) found at Culindo. For NBA, the heritabilities were
low in both environments (BMI: 0.08 ±0.02; Culindo: 0.03 ±0.02). The genetic
correlation between GR and BF was –0.05 (±0.06) at BMI and was not significantly
different from zero. At Culindo, this correlation was 0.16 (±0.11). Genetic
correlations between NBA and performance traits ranged between 0.17 and 0.20
(±0.08-0.22).
The genetic correlation (rg) estimated for GR between BMI and
Culindo was 0.96 (±0.10). This indicated that a G x E interaction did not exist
for GR (Table 5). For P2 the rg was 0.78 (±0.16). The high standard
error indicated that it was not significantly different from one. A G x E
interaction was found for NBA with the rg estimated as 0.31.
Although this indicated that NBA was a different trait in the two operations,
it is not very reliable given that it was not possible to estimate a standard
error as a result of limited data for these traits.
Table 5. Correlations between BMI and Culindo for growth rate and
backfat (Mote, 2000).
Abbreviations: GR – growth rate, P2 – backfat, LW – Large
White, LR – Landrace, rg (s.e.) – genetic correlations with standard
error in brackets. + Standard error could not be obtained.
|
Traits
|
Animals
|
rg (s.e.)
|
|
GR
|
All
|
0.96
(0.10)
|
|
LW
|
1.00
(0.15)
|
|
LR
|
0.94
(+)
|
|
P2
|
All
|
0.78
(0.16)
|
|
LW
|
0.73
(0.25)
|
|
LR
|
0.66
(0.27)
|
In conclusion, GR was the same trait in both operations. There was some
uncertainty regarding a G x E interaction for P2 between the two piggeries. It
is recommended to continue recording this trait under tropical conditions to
monitor a G x E interaction. Data were insufficient to analyse a reliable
estimate for a G x E interaction for NBA. Further data collection for NBA is
required.
5. Purebred performance in nucleus herds versus
commercial crossbred information (Van Steenbergen and Merks, 1998)
An important source of crossbred performance is of course that of
commercial pigs. Van Steenbergen and
Merks (1998) presented the results of the estimation of rpc and h2
in the TOPIGS breeding program for a sire line and its crossbred offspring
(fattening pigs). The estimated parameters were also used to investigate the
relevance of using additional crossbred data for genetic progress in crossbred
performance.
Data used
Pure line performance data of the Great Yorkshire (GY-s) was used. The
following traits were considered: ultrasonically measured backfat thickness
(mm) and daily live weight gain (g/d). Data from 32,069 performance tested
nucleus animals born between January 1993 and December 1996 were used in the
analysis. Data were obtained from three nucleus farms. Since 1995 crossbred
sows of two closed commercial herds were inseminated with semen of GY-s nucleus
boars. Those boars were used simultaneously in nucleus and the commercial
farms. All fattening pigs (gilts and castrates) were identified by means of an
electronic ear button at an age of approximately 28 days. Data of 14,990
crossbred pigs were analyzed for the traits empty carcass weight over age (CDG)
and backfat thickness (CBF) measured with the Henessy Grading Probe (HGP).
Crossbred animals descended from 127 GY-s boars, of which 85 also had
performance tested offspring in the nucleus. 161 GY-s boars had offspring in
the nucleus only. In the nucleus on average 60 offspring per sire were
performance tested, while commercial data of over 110 animals per sire were
available for analysis.
Results
The heritability of daily gain in crossbred pigs was shown to be higher
than in pure line data, 0.37 and 0.28 respectively (Table 6). Daily gain for
purebred pigs was estimated as live weight over age at a fixed age, while daily
gain of crossbred pigs was based on differences in age at a more or less fixed
carcass weight.
Table 6. Variance components and
heritability estimates for daily gain and backfat thickness.
|
Trait
|
o2p
|
o2sire
|
o2litter
|
h2
|
c2
|
PDG
|
3607
|
253
|
926
|
0.28
|
0.26
|
|
PBF
|
2.48
|
0.29
|
0.63
|
0.48
|
0.25
|
CDG
|
1630
|
150
|
317
|
0.37
|
0.19
|
|
CBF
|
6.22
|
0.47
|
1.01
|
0.30
|
0.16
|
The genetic correlation between purebred and crossbred performance (rpc)
of daily gain and backfat thickness are 0.50 and 0.56 respectively (Table 7).
The rpc of daily gain is lower than accordance with results of Merks
and Hanenberg (1998), who estimated rpc 0.9-1.0 between test
performance on purebred and crossbred boars in nucleus herds. The rpc
of backfat thickness is in better agreement with Merks and Hanenberg (1998),
0.56 versus 0.6-0.7 respectively.
Table 7. Genetic correlations
between daily gain and backfat thickness
|
Trait
|
PBF
|
CDG
|
CBF
|
|
PDG
|
-0.34
|
0.50
|
-0.15
|
|
PBF
|
|
0.37
|
0.56
|
|
CDG
|
|
|
0.34
|
Estimated (co)variances were used to calculate genetic progress for
daily gain and backfat thickness of crossbred pigs. In Table 8 the ratio
genetic progress CCPS/PLS with various numbers of crossbred offspring per sire
is given per trait.
Table 8. Ratio of CCPS to PLS response in crossbred performance with
various numbers of crossbred offspring per sire
|
|
Ratio CCPS/PLS
|
|
Nr. CB-HS
|
Daily gain
|
Backfat
|
|
1
|
1.00
|
1.00
|
|
8
|
1.23
|
1.11
|
|
24
|
1.38
|
1.21
|
|
48
|
1.46
|
1.26
|
|
96
|
1.50
|
1.30
|
|
192
|
1.53
|
1.32
|
Assuming a breeding structure where nucleus sires are
used simultaneously in the nucleus and on commercial farms, an extra genetic
response for crossbred daily gain and backfat thickness can be achieved of 53 %
and 32 % respectively. This extra selection response is even higher than
selection response based on BLUP Animal model compared to selection on own
performance. When using CCPS, one should be aware that genetic progress of daily
gain and backfat thickness in the purebred sire line will decrease by 32 % and
20 %.
6. Purebred
versus crossbred performance for litter size (Täubert et al., 1998)
In most crossbreeding
programs the selection for purebred performance in the nucleus is the method of
choice because the selection for crossbred performance is very expensive and
takes a lot of time. The development of the animal model with the use of a
relationship matrix made it possible to build a model for the estimation of the
genetic correlation between purebred and crossbred performance. The performance
of purebred and crossbred animals is treated as different traits and the
analysis is made under a multiple trait animal model.
Data used
For the analysis two data
sets were available. The first data set was an Australian data set with 8,341
Large White sows, 3,236 Landrace sows and 12,127 Large White x Landrace
crossbred sows. Both reciprocal crosses were available. The second data set was
taken from the German breeding company Bundeshybridzuchtprogramm (BHZP).
Records were available from the multiplier herds for 11,577 purebred sows and
from sow management programs for 12,127 crossbred sows. The sows from the
multiplier herds could be identified as dams of the crossbred sows, so the
relationship between purebred and crossbred sows could be established. Because
of the missing reciprocal cross only one purebred dam line and the F1 daughters
could be analyzed.
Results
The results of the estimated heritabilities and
genetic correlations between purebred and crossbred performance are shown in
Table 9 (Australian data set) and in Table 10 (German data set).
Table 9. Heritabilities and genetic correlations between
purebred and crossbred litters in the Australian data set
|
|
Purebred
|
Crossbred
|
|
|
|
h2 (pb)
|
h2 (cb)
|
rpc
|
|
1st litter
|
0.075
|
0.084
|
0.998
|
|
2nd litter
|
0.099
|
0.069
|
0.689
|
|
3rd litter
|
0.084
|
0.072
|
0.834
|
Table 10. Heritabilities and genetic correlations between purebred and
crossbred litters in the German data set
|
|
Purebred
|
Crossbred
|
|
|
|
h2 (pb)
|
h2 (cb)
|
rpc
|
|
1st litter
|
0.070
|
0.082
|
0.800
|
|
2nd litter
|
0.075
|
0.045
|
0.999
|
|
3rd litter
|
0.102
|
0.103
|
0.810
|
Heritabilities in both data sets are in the expected range of 0.05 –
0.10. The standard errors for the heritabilities of the purebred sows are in
the range between 0.0044 and 0.0066, for the heritabilities of the crossbred
sows in the range between 0.01 and 0.12 and for the genetic correlations in the
range between 0.003 and 0.120. The heritabilities in the Australian data set
are very similar to those in the German data set. In the Australian data set
the second litter of the purebred sows has the highest heritability of the
three litters, whereas in the German data set the heritability is continuously
rising with the number of litters. Both have been noticed in former analyses
(Roehe and Kennedy, 1995). In crossbred parameters the second litter shows the
smallest heritability in both data sets, where in the German data set it nearly
amounts to the half of the other two litters. The genetic correlations between
purebred and crossbred performance are similar in both data sets and very high.
They are, except the value for the second litter in the Australian data set,
not significantly different from 1.
Implications
Finally, the consequences of the moderate genetic correlations for the
design and efficiency of pig breeding programs need to be considered. In
general, the accuracy of selection across levels of the breeding program is
directly proportional to (rG / [ rgP * rgH ] ½
) (Merks, 1988) where rgP and
rgH are the genetic correlations within respectively the level where
the performance information is collected and the level where the breeding goal
is defined. However, for a fixed rG, the greatest genetic progress
may be reached if rgP and rgH are the genetic
correlations within the level where the index information is collected and the
level where the breeding goals are defined, respectively. However, for a fixed
rG, the greatest genetic progress may be reached if rgP =
rG. A limited number of test places are best used by distributing
the representatives of the genotype over as many herds as possible.
Results of the different G x E studies summarised in this paper indicate
poor genetic correlations for specific within farm differences (0.7 – 1.0),
general across farm differences (0.5 – 1.0), pure versus crossbreeding nucleus
(0.6 – 1.0), and consequently for nucleus versus commercial level (0.5 – 1.0).
However, it should be mentioned, that traits measured are not always identical,
that the connectedness of data is far from optimal.
For
improved genetic progress at the commercial level, in general, the options
available are 1) using purebreds at the commercial level and 2) making the
nucleus level more comparable with the commercial level (traits, management
etc.) However, both options are not practical. The options applied by TOPIGS
are 1) direct supply of genetics from the nucleus, 2) using the satellite
nucleus system across environments, and 3) applying Combined Crossbred and
Purebred Selection (CCPS).
Figure 3. Satellite Nucleus System TOPIGS
In the nucleus, the combination of purebred selection and selection on
crossbred information only, it is important that the use of crossbred
information should NOT prolong generation interval, i.e. AI boars should
produce purebreds and crossbreds simultaneously. The effect largely depends on
rgpc and h2 of both purebred and crossbred performance.
The effects calculated range from 0 to >100 % extra genetic progress. In the
nucleus, genetic progress is lower when CCPS is applied.
Conclusions
In most breeding
programs genetic progress is lower at the commercial level than expected from
genetic progress at the nucleus level:
-
Traits measured are not identical (e.g.
ultrasonic backfat versus carcass backfat).
-
Variation within and between farm environments
causes genotype x environment interaction.
-
Progress in pure line breeding is not equal to
genetic progress in crossbreeding systems (measured by progeny of same sires).
Genetic progress at the commercial level can be
improved very much by:
-
The definition of the breeding goal at the
commercial level.
-
Application of the satellite nucleus system
across various ‘environments’.
-
Application of the Combined Crossbred and
Purebred Selection (CCPS) system.
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